Students will gain knowledge about the most important methods for experimental acquisition of neural data and the respective analytical methods, they will learn about the different fields of application, the advantages and disadvantages of the different methods, and will become familiar with the respective raw data. They will be enabled to choose the most appropriate analysis method and apply them to experimental data.

In the winter semester, the course focuses on the acquisition of neural data: large scale signals (fMRI, EEG, MEG etc) and cellular signals, as well as hands-on experience with neural data acquisition techniques.

Semester: WiSe 2024/25


Semester: WiSe 2024/25


Semester: WiSe 2024/25

Time: Mondays, 4.15-5.45 pm
Location: BCCN lecture hall, House 6, Philippstr. 13, 10115 Berlin

Semester: WiSe 2024/25

Participants of "Models of Neural Systems" should learn basic concepts, their theoretical foundation, and the common models used in Computational Neuroscience. The Module ''Models of Neural Systems'' also provides some neurobiological knowledge and explains the relevant theoretical approaches as well as the findings resulting form these approaches so far.

After completing the Module, participants should understand strengths and limitations of the different models. Participating students will learn to appropriately choose the theoretical methods for modeling cellular neural systems. They will learn how to apply these methods while taking into account the neurobiological findings, and they should be able to critically evaluate results obtained. Participants should also be able to adapt models to new problems as well as to develop new models of neural systems.

Semester: WiSe 2024/25

This course is intended as bridge for students enrolled in Computational Neuroscience. The aim is to provide the basics in neurophysiology.

The module provides an overview of the current state of brain research and a summary of the fundamental biological background necessary for the design and implementation of models. After completing the module, participants should understand the general architecture of the mammalian brain with its major components and areas including circuitry, the major cell types and their function and the basic physiological principles that govern brain function. Participating students will be given an introduction to state-of-the-art research approaches in various disciplines of neuroscience including behavioral neuroscience, electrophysiology and imaging techniques. The emphasis of the course is on imparting the absolutely necessary basics required for modeling biologically relevant information systems.

The course covers basic neuroscience largely following the approach used in the textbook Bears, Connors & Paradiso. The course begins with a basic introduction to cells and neurons, the basic physiology of nerve cells and basic anatomy of the brain including the specific circuitry of major subregions such as the neocortex, hippocampus, limbic system, cerebellum and the basal ganglia. After this introduction, specific biologically based topics of interest to computational neuroscientist are treated including sensory transduction and different modalities, learning and memory, biological constraints on coding in the brain, large-scale approaches to understanding the brain, neuroscience in the laboratory and behavioural neuroscience. Time is given at the mid-point and end of the course for revision and discussions of relevant topics of interest to the students.

Semester: WiSe 2024/25

Aspects of randomness in neural activity and information processing can be successfully analyzed in terms by stochastic models. This course gives an introduction to the models and measures of neural noise (or 'variability' as it is more often called) and should enable the student to follow the current literature on the subject on his/her own. To this end, some key concepts from nonlinear dynamics, stochastic processes, and information theory are outlined. Then a number of basic problems (see below) is addressed; here, the main emphasis is given to analytically tractable models, but simulation techniques are explained as well. As an outlook some more involved problems (ISI statistics under correlated ('colored') noise, with subthreshold oscillations, or with adaptation, stimulus-induced correlations) are sketched at the end of the course.

Contents include: Key concepts from nonlinear dynamics (bifurcations, fixed points, manifolds, limit cycle), stochastic processes (Langevin and Fokker-Planck equations, Master equation, linear response theory), information theory (mutual information and its lower and upper bounds), point processes (Poisson process; renewal vs. nonrenewal point process). Neural noise sources and how they enter different neuron models, the diffusion approximation of synaptic input or channel fluctuations by a Gaussian noise, measures of spike train and interval variability and their interrelation, Poisson spike train: entropy & information content, one-dimensional stochastic integrate-and-fire (IF) neurons: spontaneous activity, response to weak stimuli & information transfer, different forms of stochastic resonance in single neurons and neuronal populations, multidimensional IF models: subthreshold resonances, synaptic filtering & spike-frequency adaptation, effect of nonrenewal behavior of the spontaneous activity on the information transfer, outlook: stimulus-driven correlations; networks of stochastic neurons.

Semester: SoSe 2024
Semester: SoSe 2024
Semester: SoSe 2024
Semester: SoSe 2024
Semester: SoSe 2024
Semester: SoSe 2023
Semester: WiSe 2022/23
Semester: WiSe 2023/24
Semester: SoSe 2023
Semester: SoSe 2023
Semester: SoSe 2023
Semester: WiSe 2023/24
Semester: WiSe 2023/24
Semester: WiSe 2023/24
Semester: WiSe 2023/24
Semester: WiSe 2023/24